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13 Easy Gluten-Free Pumpkin Muffin Recipes to Try This Fall

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Last updated on July 9, 2025.

You know fall has officially arrived when your brain starts whispering, “Should I put pumpkin in this?” And honestly, if you’re anything like us, the answer is almost always YES.

But here’s the thing. Finding a good gluten-free pumpkin muffin recipe isn’t always as easy as it should be.

We’ve baked our way through the dry ones, the gummy ones, and the sad little muffins that crumbled into chaos the second you looked at them funny.

One batch literally disintegrated when Matthew tried to lift it from the pan. He still ate two with a spoon. (Respect)

So we did the only reasonable thing. We gathered up the BEST of the best. Tested, tasted, and approved by real humans who just want a muffin that’s fluffy, moist, full of cozy fall flavor, and actually gluten-free.

These 13 recipes deliver every time. Some are dairy-free. A few sneak in a cream cheese surprise. One has a streusel topping that could probably solve most problems in life.

And all of them passed the ultimate test. Our kiddo ate one, asked for another, THEN tried to sneak a third when he thought we weren’t looking.

Whether you’re baking for a brunch, stashing snacks in the freezer, or just need something sweet with your coffee that doesn’t taste like disappointment, these gluten-free pumpkin muffins are about to become your go-to. Trust us. You’re going to love EVERY BITE.

(Just maybe don’t tell anyone they’re gluten-free until after they’ve fallen in LOVE. It’s more fun that way.)

Gluten Free Pumpkin Muffin Recipes

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13 Best Gluten-Free Pumpkin Muffin Recipes

We all have that one recipe we go back to every fall. You know the one. It’s got a smudge of pumpkin on the corner, a little scribble that says “add more cinnamon,” and it’s been folded and stuffed in a cookbook since 2017.

These muffins? They’re ready to earn their place right next to it.

And let’s be clear. These are not the muffins people politely nibble while secretly wishing for a doughnut.

These are the real deal. Moist, fluffy, full of pumpkin spice goodness, and ACTUALLY gluten free. Some are dairy free too. A couple are totally plant-based.

And one has a cream cheese center that might make you emotional. We’ve tested every single one more times than we’d like to admit, mostly because we “accidentally” ate the first batch.

So grab your mixing bowl, crank up your oven, and light that pumpkin-something candle you bought on impulse.

These 13 gluten free pumpkin muffin recipes are here to make your kitchen smell amazing and your mornings a whole lot cozier. Trust us, you’re going to want to try EVERY SINGLE ONE.

1
meaningfuleats.com

The Best Gluten-Free Pumpkin Muffins

“The very BEST recipe for soft, spiced gluten-free pumpkin muffins! They bake up tall and fluffy and are perfect for cool fall mornings.
Looking to make a delicious gluten-free pumpkin baked good? I tested this recipe 5+ times to get it just right. We continue to make it year after year!”
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2
frommybowl.com

Healthy Gluten-Free Pumpkin Muffins

“Fluffy and moist, these One Bowl Pumpkin Muffins are the perfect Fall treat! They’re great for breakfast or dessert and are vegan & gluten-free.”
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3
ambitiouskitchen.com

Almond Butter Chocolate Pumpkin Muffins

“Nourishing almond butter chocolate pumpkin muffins made with creamy almond butter, real pumpkin puree and oat flour to keep them gluten free.
These one bowl almond butter chocolate pumpkin muffins are dairy free and naturally sweetened but seriously taste like chocolate cake! The perfect nourishing snack or breakfast that kiddos will love.”
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4
theloopywhisk.com

Gluten Free Pumpkin Cream Cheese Muffins

“These gluten free pumpkin cream cheese muffins are super soft, moist and tender, stuffed with a creamy vanilla cream cheese filling and topped with a crisp, buttery streusel. They’re the perfect cosy, no-fuss fall dessert – super easy to make and guaranteed to be a hit with absolutely everyone, even non-gluten-free folks.”
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5
gentletummy.com

Gluten-Free Pumpkin Muffin Recipe with Oat Streusel

“These gluten-free pumpkin muffins are made with oat and almond flour, naturally sweetened with applesauce, maple syrup, and coconut sugar. Topped with a quick oat streusel, these light and fluffy muffins are packed with fall flavors and perfect for breakfast, snacks, or dessert, with half the sugar of traditional muffins.”
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6
wellplated.com

Almond Flour Pumpkin Muffins

“Amazingly moist Almond Flour Pumpkin Muffins are so easy to bake and taste absolutely scrumptious! These healthy muffins are low carb Paleo and gluten free.”
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7
ohsheglows.com

One Bowl Pumpkin Chocolate Muffins (Vegan + Gluten-free)

“One thing that’s been especially hard during my recent health struggles is that I’ve had some negative feelings resurface surrounding food and restriction. Those of you who’ve been reading for years may know that one of the reasons I started blogging back in 2008 was to share my journey to health. I spoke a lot…”
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8
texanerin.com

Gluten-free Pumpkin Muffins (amazing texture!)

“These gluten-free pumpkin muffins are the best I’ve ever had – gluten-free or not! They have the perfect texture and can easily be made dairy-free.…”
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9
therealfooddietitians.com

Gluten-Free Pumpkin Chocolate Chip Muffins

“Your Fall baking list is now complete with these Gluten-free Pumpkin Chocolate Chip Muffins! Studded with chocolate chips & pecans, you’re in for a treat!”
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10
eatwithclarity.com

Gluten Free Pumpkin Muffins

“These gluten free pumpkin muffins are the perfect Fall recipe. They’re filled with chocolate chips and topped with cinnamon streusel.”
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11
thelittlepine.com

Low Carb Keto Pumpkin Muffins (+ Streusel Topping!)

“These spiced, aromatic keto pumpkin muffins are petite, portable, and absolutely perfect as a snack or on-the-go breakfast.”
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12
dishingouthealth.com

Pumpkin Chocolate Chip Muffins (Gluten Free)

“These Healthy Pumpkin Chocolate Chip Muffins are supremely moist, naturally sweetened, and packed with pure pumpkin flavor. Prep a batch for the week, and enjoy these wholesome gluten free pumpkin muffins on repeat.”
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13
sugarylogic.com

Pumpkin Banana Muffins

“These Pumpkin Banana Muffins are a great healthy Fall breakfast! They’re mostly sweetened with banana, and made with less butter, with pumpkin puree instead. They’re a fluffy, banana-filled, easy breakfast to bake that kids and adults will love.”
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sarahbakes23
sarahbakes23
2 years ago
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5 stars
chocolate chips worked great for me! I made them last weekend and added dark chocolate. the almond butter + chocolate combo is just ?

Nicole S.
Nicole S.
2 years ago
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5 stars
I made the gluten-free pumpkin muffins with coconut sugar as a low-sugar option, and they were perfect! I added some sunflower seeds for texture, and my kids gobbled them up

cookinmom22
cookinmom22
2 years ago
Reply to  Nicole S.

made these and they turned out like little rocks. total waste of ingredients. maybe it’s just me, but gluten-free baking never works.