Protein Bagels with Greek Yogurt

There’s something magical about biting into a warm, freshly baked bagel—especially when it’s soft, chewy, and packed with protein!

If you’re looking for a guilt-free, high-protein option that still satisfies your bagel cravings, this Protein recipe is exactly what you NEED.

We LOVE a good bagel moment in our house.

But let’s be honest—most store-bought versions don’t exactly scream “healthy breakfast.”

That’s why we’ve been OBSESSED with these homemade protein bagels that use simple ingredients, no yeast, and ZERO waiting time.

And the best part? They have that perfect fluffy texture without being dry or dense.

We’ve been obsessed with these protein bagels lately because they’re:
✔️ Quick & easy – No fancy techniques or long rising times.
✔️ Super fluffy – Thanks to Greek yogurt and a perfect flour balance.
✔️ Protein-packed – Keeping you fuller, longer!
✔️ Customizable – Sweet, savory, or classic—these bagels do it all.

Now, let’s get to the good stuff.

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Ingredients & Substitutes

We said this is the easiest homemade protein bagel recipe, and we meant it!

Just a few simple ingredients stand between you and a batch of soft, chewy, high-protein bagels.

Plus, no yeast, no long waiting time, and no boiling needed!

Here’s what you’ll need.

Base Ingredients:

• 1 ⅔ cup (210g) all-purpose flour – We recommend all-purpose flour for the softest, fluffiest texture. If using self-rising flour, omit the baking powder.
• ⅔ cup (180g) Greek yogurt (5% or 2% fat) – Full-fat Greek yogurt gives the best texture and makes these bagels soft and moist. You can use low-fat or lactose-free Greek yogurt, but the taste and texture may differ slightly.
• 1 ½ tsp baking powder – The key to getting that perfect rise without yeast.
• ½ to 1 tsp Kosher salt – Enhances flavor and improves the dough’s structure. Regular sea salt works just fine as a substitute.

For That Golden Crust:

• 1 egg (or one egg white) – Brushing the bagels before baking gives them a beautiful golden color. You can skip this for a matte finish, but we highly recommend it!

Optional Toppings:

Sprinkle your bagels with:

• Everything bagel seasoning – A savory favorite!
• Sesame or poppy seeds – Adds crunch and flavor.
• Cinnamon sugar – For a sweet twist.
• Grated cheese – Because cheese makes everything better!

How to Make Protein Bagels from Scratch

Making homemade protein bagels is easier than you think.

With just a few simple steps, you’ll have soft, chewy bagels that rival your favorite bakery—without yeast, boiling, or long waiting times.

Step 1: Make the Yeast-Free Dough

1. Preheat your oven to 375°F (190°C) and line a baking sheet with parchment paper.
2. In a large mixing bowl, combine all-purpose flour, baking powder, and salt. Stir to mix evenly.
3. Add the Greek yogurt and stir with a spoon or spatula until a dough starts to form.
4. Lightly flour a clean surface and transfer the dough. Knead for about 2 minutes until the dough is soft and smooth. If it’s too sticky, add a little more flour. If too dry, add a touch more Greek yogurt.

Step 2: Shape the Bagels

1. Divide the dough into 4 equal portions (for standard bagels) or 6 portions (for smaller bagels).
2. Roll each piece into a rope about 6 inches (15 cm) long and connect the ends to form a bagel shape.
3. Place the shaped bagels onto the lined baking sheet, leaving some space between them.

Step 3: Add the Egg Wash & Toppings

1. In a small bowl, whisk one egg (or egg white) and brush it over the tops of the bagels.
2. Sprinkle your favorite toppings like sesame seeds, poppy seeds, everything bagel seasoning, or cinnamon sugar.

Step 4: Bake to Perfection

1. Transfer the baking sheet to the preheated oven and bake for 20-25 minutes, or until the tops are golden brown and firm to the touch.
2. If you love an extra crispy crust, broil the bagels for 1-2 minutes at the end of baking.

Step 5: Let Them Cool & Enjoy!

1. Let the bagels cool for at least 15 minutes before slicing. This helps them set and develop the best texture.
2. Slice, toast, and enjoy with your favorite spreads like cream cheese, avocado, or peanut butter!

READ MORE: 10 Overnight Oats Recipes for a Make-Ahead Healthy Breakfast

How to Make Protein Bagels in the Air Fryer

Prefer an air fryer method? It’s just as easy!

1. Preheat your air fryer to 280°F (140°C).
2. Place 2-3 bagels in the air fryer basket, leaving space between them.
3. Air fry for 15-20 minutes until golden brown and cooked through.
4. Let cool before slicing and serving.

Success Tips

• Prefer full-fat Greek yogurt. It makes the bagels richer, softer, and more flavorful.
• Adjust the dough. Too sticky? Add flour. Too dry? More Greek yogurt. Aim for a soft, slightly tacky dough.
• Do not over-knead. Work the dough just until smooth—overdoing it leads to tough bagels.
• Shape evenly. Keep bagels the same size for even baking, and press the ends together firmly.
• Use an egg wash. It gives that golden, bakery-style crust. Skip it for a matte finish.
• Watch the baking time. Check at 20 minutes. For extra crispiness, broil for 1-2 minutes at the end.
• Let them cool. Rest for 15 minutes before slicing to keep them soft and fluffy.
• Customize. Sweet or savory, mix in your favorite flavors—cinnamon, garlic, cheese, or seeds.

Protein Bagels with Greek Yogurt

The easiest homemade Protein Bagels, packed with over 13g of protein per bagel. This high-protein bagel recipe requires just two main ingredients—flour and Greek yogurt—no yeast needed. Soft, fluffy, and perfect for breakfast or meal prep, these bagels deliver great texture and flavor without any hassle.

Print Recipe

Prep Time 10 minutes mins

Cook Time 20 minutes mins

Total Time 30 minutes mins

Course Breakfast

Cuisine American

Servings 4 bagels

Ingredients

  

• 1 ⅔ cup 210 g all-purpose flour (or use self-rising flour and omit baking powder)
• ⅔ cup 180 g Greek yogurt (5% or 2% fat)
• 1 ½ tsp baking powder
• ½ to 1 tsp Kosher salt or sea salt, adjust to taste
• 1 egg or one egg white (for egg wash)
• Seeds of choice optional, for topping

Instructions

 

• Preheat oven to 375°F (190°C) and line a baking sheet with parchment paper.
• In a large bowl, whisk together flour, baking powder, and salt. Add Greek yogurt and stir until a dough forms. (If sticky, add a little flour; if too dry, add more yogurt.)
• Transfer dough to a lightly floured surface and knead for about 2 minutes until smooth.
• Divide dough into 4 equal portions (for standard bagels) or 6 portions (for smaller bagels).
• Roll each piece into a 6-inch (15 cm) rope and connect the ends to form a ring.
• Brush the bagels with egg wash and sprinkle with your favorite toppings.
• Place bagels on the baking sheet and bake for 20-25 minutes until golden brown.
• Let cool for at least 15 minutes before slicing.

How to Make Protein Bagels in the Air Fryer

• Preheat air fryer to 280°F (140°C).
• Place 2-3 bagels in the air fryer basket, leaving space between each.
• Air fry for 15-20 minutes until golden brown.
• Let cool for at least 15 minutes before serving.

Notes

• For a softer texture, use full-fat Greek yogurt.
• Customize flavors—add cinnamon and honey for a sweet version or mix in garlic and herbs for a savory twist.
• If using self-rising flour, omit the baking powder.
• For extra crispiness, broil bagels for 1-2 minutes at the end of baking.
• Let bagels cool before slicing to set their texture.